PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018556-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 240aa    MW: 27704.3 Da    PI: 8.3169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018556-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.9e-1178125355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er RRd+ ++ +e L ++lP+      +K++K++i++ A+ Y+++L+
  NNU_018556-RA  78 YRHMISERVRRDKQRQNYEALHSILPPG-----TKNEKISIVRAATSYLQDLE 125
                    568899********************97.....8****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1367139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.8375124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.93E-779123No hitNo description
PfamPF000106.3E-879125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1080138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-781130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEDPFRAWET QRATNWPEAP SVNQSAFTRY TTLTQEFRPN NPVSVSNRPN CNKRIIELLR  60
AISNARSKSR ESETDRCYRH MISERVRRDK QRQNYEALHS ILPPGTKNEK ISIVRAATSY  120
LQDLEKLKEE LEKQNHELGV SLAGKADQTQ DSTKKIRLQV CNPSSAIDSM VWVLRWLKSM  180
NLKARKIESK FSVQEFSAVL EIETEIEAAA VENAMQCALM EVERKLAVDF VEREEYSGSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274176.11e-179PREDICTED: transcription factor bHLH92-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.13e-22bHLH family protein